Mauricio Carneiro a19c27297f continuing the BQSR triage... ... * fixed the loading of the new reduced size reports * reduced BQSR scala script memory to 2Gb * removed dcov parameter from BQSR scala script * fixed estimatedQReported calculation from -log10(pe) to -10*log10(pe). * updated md5's with the proper PHRED scaled EstimatedQReported		2012-04-05 14:34:15 -04:00
..
R	Further cleanup of R	2012-03-22 21:24:37 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	continuing the BQSR triage...	2012-04-05 14:34:15 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Added more primitives to GATK Report Column Type	2012-03-28 09:07:54 -04:00
testdata	continuing the BQSR triage...	2012-04-05 14:34:15 -04:00