gatk3的最后一个经典版本3.8

Mauricio Carneiro a19c27297f continuing the BQSR triage... ... * fixed the loading of the new reduced size reports * reduced BQSR scala script memory to 2Gb * removed dcov parameter from BQSR scala script * fixed estimatedQReported calculation from -log10(pe) to -10*log10(pe). * updated md5's with the proper PHRED scaled EstimatedQReported		2012-04-05 14:34:15 -04:00
public	continuing the BQSR triage...	2012-04-05 14:34:15 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	Updated license year	2012-03-27 14:32:02 -04:00
build.xml	Bug fix to previous UnifiedGenotyperEngine refactoring, removed debug code	2012-03-25 10:20:21 -04:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00