gatk3的最后一个经典版本3.8

Mark DePristo a1920397e8 Major bugfix for per sample VariantEval ... -- per sample stratification was not being calculated correctly. The alt allele was always remaining, even if the genotype of the sample was hom-ref. Although conceptually fine, this breaks the assumptions of all of the eval modules, so per sample stratifications actually included all variants for everything. Eric is going to fix the system in general, so this commit may break the build.		2011-09-07 12:18:11 -04:00
public	Major bugfix for per sample VariantEval	2011-09-07 12:18:11 -04:00
settings	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Enable conditional inclusion of documentation for hidden features in GATKDocs.	2011-08-27 03:38:01 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00