asivache a18e31f5b8 If alignment context at the locus holds extended event, get rod metadata and (importantly) reference bases for the whole span of the event (if it is a deletion that is, insertions still have length 0 on the ref!) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2489 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-30 21:56:25 +00:00
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net/sf/samtools	A rethink of the existing BAM block extraction code: rather than working in	2009-12-30 18:19:51 +00:00
org/broadinstitute/sting	If alignment context at the locus holds extended event, get rod metadata and (importantly) reference bases for the whole span of the event (if it is a deletion that is, insertions still have length 0 on the ref!)	2009-12-30 21:56:25 +00:00