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gatk-3.8/PairHMM_JNI
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Karthik Gururaj a14a11c0cf Pulled Mohammad's changes for creating variable sized arrays 
Merge branch 'master' of /home/mghodrat/PairHMM/shared-repository into intel_pairhmm

Conflicts:
	PairHMM_JNI/org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc
 		2014-01-26 19:40:43 -08:00
..
.gitignore Deleted libJNILoglessPairHMM.so from git tracking 2014-01-21 15:01:09 -08:00
JNI_README Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
LoadTimeInitializer.cc Temporary commit before moving to new native library 2014-01-24 16:29:35 -08:00
LoadTimeInitializer.h Temporary commit before moving to new native library 2014-01-24 16:29:35 -08:00
Makefile 1. Cleaned up code 2014-01-26 19:18:12 -08:00
avx_function_instantiations.cc Clean up 2014-01-26 11:36:06 -08:00
baseline.cc Clean up 2014-01-26 11:36:06 -08:00
define-double.h Clean up 2014-01-26 11:36:06 -08:00
define-float.h Clean up 2014-01-26 11:36:06 -08:00
define-sse-double.h Clean up 2014-01-26 11:36:06 -08:00
define-sse-float.h Clean up 2014-01-26 11:36:06 -08:00
headers.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
jni_common.h 1. Cleaned up code 2014-01-26 19:18:12 -08:00
jnidebug.h 1. Cleaned up code 2014-01-26 19:18:12 -08:00
org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.cc 1. Cleaned up code 2014-01-26 19:18:12 -08:00
org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.h Temporary commit before moving to new native library 2014-01-24 16:29:35 -08:00
org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc Pulled Mohammad's changes for creating variable sized arrays 2014-01-26 19:40:43 -08:00
org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.h Temporary commit before moving to new native library 2014-01-24 16:29:35 -08:00
pairhmm-1-base.cc 1. Converted q,i,d,c in C++ from int* to char* 2014-01-22 22:57:32 -08:00
pairhmm-template-kernel.cc Clean up 2014-01-26 11:36:06 -08:00
pairhmm-template-main.cc Clean up 2014-01-26 11:36:06 -08:00
run.sh 1. Cleaned up code 2014-01-26 19:18:12 -08:00
shift_template.c Clean up 2014-01-26 11:36:06 -08:00
sse_function_instantiations.cc Clean up 2014-01-26 11:36:06 -08:00
template.h Clean up 2014-01-26 11:36:06 -08:00
utils.cc Pulled Mohammad's changes for creating variable sized arrays 2014-01-26 19:40:43 -08:00
utils.h Temporary commit before moving to new native library 2014-01-24 16:29:35 -08:00
vector_defs.h Clean up 2014-01-26 11:36:06 -08:00
vector_function_prototypes.h Clean up 2014-01-26 11:36:06 -08:00