hanna f73dd09399 More preparation for bwa patch: create a crude, minimal build system to build ... against a static library that the bwa compile (now) generates. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1980 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-06 18:41:01 +00:00
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Makefile	More preparation for bwa patch: create a crude, minimal build system to build	2009-11-06 18:41:01 +00:00
bntseq.c	Temporarily adding changed bwa files to Sting repository until I can pull together the official bwa patch.	2009-11-04 21:46:05 +00:00
bntseq.h	Temporarily adding changed bwa files to Sting repository until I can pull together the official bwa patch.	2009-11-04 21:46:05 +00:00
build_linux.sh	More preparation for bwa patch: create a crude, minimal build system to build	2009-11-06 18:41:01 +00:00
build_mac.sh	More preparation for bwa patch: create a crude, minimal build system to build	2009-11-06 18:41:01 +00:00
bwa_gateway.cpp	Fix minor mapping quality bug.	2009-11-04 14:33:23 +00:00
bwa_gateway.h	The BWA/C bindings were triggering the local aligner to repeatedly reload the	2009-11-03 00:01:55 +00:00
bwase.c	Temporarily adding changed bwa files to Sting repository until I can pull together the official bwa patch.	2009-11-04 21:46:05 +00:00
bwase.h	Temporarily adding changed bwa files to Sting repository until I can pull together the official bwa patch.	2009-11-04 21:46:05 +00:00
bwtaln.c	Temporarily adding changed bwa files to Sting repository until I can pull together the official bwa patch.	2009-11-04 21:46:05 +00:00
bwtaln.h	Temporarily adding changed bwa files to Sting repository until I can pull together the official bwa patch.	2009-11-04 21:46:05 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.cpp	Created walkers for alignment, validation.	2009-10-30 15:04:07 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.h	Created walkers for alignment, validation.	2009-10-30 15:04:07 +00:00