Eric Banks a12bc63e5c Get rid of support for bams without sample information in the read groups. This hidden option wasn't being used anyways because it wasn't hooked up properly in the AlignmentContext.		2011-11-05 23:54:28 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Get rid of support for bams without sample information in the read groups. This hidden option wasn't being used anyways because it wasn't hooked up properly in the AlignmentContext.	2011-11-05 23:54:28 -04:00
test	Adding integration test to cover using expressions with IDs (-E foo.ID)	2011-11-05 23:53:15 -04:00