asivache a12933a26d Bug fixed: now the length of an insertion is determined correctly. Thought I committed this... ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2599 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-15 20:58:48 +00:00
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alignment	Misc bug fixes.	2010-01-05 14:48:19 +00:00
analyzecovariates	Fixed an issue with recalibrating original quality scores above Q40. There is a new option -maxQ which sets the maximum quality score possible for when a RecalDatum tries to compute its quality score from the mismatch rate. The same option was added to AnalyzeCovariates to help with plotting q scores above Q40. Added an integration test which makes use of this new -maxQ option.	2010-01-07 13:50:30 +00:00
gatk	Bug fixed: now the length of an insertion is determined correctly. Thought I committed this...	2010-01-15 20:58:48 +00:00
oneoffprojects	two fixes in the new cached DbSNP code:	2010-01-13 00:27:34 +00:00
playground	Looks bigger than it is:	2010-01-15 00:14:35 +00:00
utils	Fixing the AC annotation to be in line with the VCF spec	2010-01-15 18:28:52 +00:00