20 lines
1.0 KiB
Plaintext
20 lines
1.0 KiB
Plaintext
##fileformat=VCFv4.0
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##fileDate=20090805
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##source=myImputationProgramV3.1
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##reference=1000GenomesPilot-NCBI36
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##phasing=partial
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##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
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##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
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##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
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##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele">
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##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129">
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##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership">
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##FILTER=<ID=q10,Description="Quality below 10">
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##FILTER=<ID=s50,Description="Less than 50% of samples have data">
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#CHROM POS ID REF ALT QUAL FILTER INFO
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20 14370 rs6054257 G A 29 PASS NS=3;DP=14;AF=0.5;DB;H2
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20 17330 . T A 3 q10 NS=3;DP=11;AF=0.017 GT:GQ:DP:HQ
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20 1110696 rs6040355 A G,T 67 PASS NS=2;DP=10;AF=0.333,0.667;AA=T;DB
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20 1230237 . T . 47 PASS NS=3;DP=13;AA=T GT:GQ:DP:HQ
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20 1234567 microsat1 GTCT G,GTACT 50 PASS NS=3;DP=9;AA=G
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20 1234587 supersite GGGG G 50 PASS NS=3;DP=9;AA=G |