63 lines
2.6 KiB
TeX
63 lines
2.6 KiB
TeX
\documentclass[10pt]{article}
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\usepackage[lmargin=0.3in, rmargin=0.3in, tmargin=0.9in, bmargin=0.9in, paperwidth=10.0in, paperheight=7.5in]{geometry}
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\usepackage{multicol}
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\usepackage{graphicx}
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\usepackage{fancyhdr}
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\pagestyle{fancy}
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\begin{document}
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\lhead{\bfseries{\Large{Callset concordance - $population$ samples}}}
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\rhead{}
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\chead{}
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\begin{center}
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\begin{tabular}{|r|l|l|}
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\multicolumn{3}{l}{\bfseries{UG and QCALL}} \\
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\hline
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Set & Variants & Ti/Tv \\
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\hline
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All SNPs & $Intersection.called.all.nVariantLoci$ & $Intersection.called.all.ti/tv_ratio$ \\
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Known SNPs & $Intersection.called.known.nVariantLoci$ & $Intersection.called.known.ti/tv_ratio$ \\
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Novel SNPs & $Intersection.called.novel.nVariantLoci$ & $Intersection.called.novel.ti/tv_ratio$ \\
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Filtered in UG, present in QCALL & $InUG-FilteredInQCALL.called.all.nVariantLoci$ & $InUG-FilteredInQCALL.called.all.ti/tv_ratio$ \\
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Filtered in QCALL, present in UG & $InQCALL-FilteredInUG.called.all.nVariantLoci$ & $InQCALL-FilteredInUG.called.all.ti/tv_ratio$ \\
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\hline
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\end{tabular} \\[0.1in]
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\includegraphics[width=95mm, type=png, ext=.png, read=.png]{$venndiagram$}
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\end{center}
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\begin{multicols}{2}
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\hfill
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\begin{tabular}{|r|l|l|}
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\multicolumn{3}{l}{\bfseries{UG only}} \\
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\hline
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Set & Variants & Ti/Tv \\
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\hline
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All SNPs & $UG.called.all.nVariantLoci$ & $UG.called.all.ti/tv_ratio$ \\
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Known SNPs & $UG.called.known.nVariantLoci$ & $UG.called.known.ti/tv_ratio$ \\
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Novel SNPs & $UG.called.novel.nVariantLoci$ & $UG.called.novel.ti/tv_ratio$ \\
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Filtered & $UG.filtered.all.nVariantLoci$ & $UG.filtered.all.ti/tv_ratio$ \\
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\hline
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\end{tabular}
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\begin{tabular}{|r|l|l|}
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\multicolumn{3}{l}{\bfseries{QCALL only}} \\
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\hline
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Set & Variants & Ti/Tv \\
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\hline
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All SNPs & $QCALL.called.all.nVariantLoci$ & $QCALL.called.all.ti/tv_ratio$ \\
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Known SNPs & $QCALL.called.known.nVariantLoci$ & $QCALL.called.known.ti/tv_ratio$ \\
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Novel SNPs & $QCALL.called.novel.nVariantLoci$ & $QCALL.called.novel.ti/tv_ratio$ \\
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Filtered & $QCALL.filtered.all.nVariantLoci$ & $QCALL.filtered.all.ti/tv_ratio$ \\
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\hline
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\end{tabular}
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\end{multicols}
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\lfoot{}
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\cfoot{}
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\rfoot{\small{1,000 Genomes Automated Data Processing Report ($timestamp$)}}
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\end{document}
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