66 lines
2.3 KiB
TeX
66 lines
2.3 KiB
TeX
\documentclass[10pt]{article}
|
|
|
|
\usepackage[margin=1in, paperwidth=10.0in, paperheight=7.5in]{geometry}
|
|
\usepackage{multicol}
|
|
\usepackage{fancyhdr}
|
|
\pagestyle{fancy}
|
|
|
|
\begin{document}
|
|
\lhead{\bfseries{\Large{1,000 Genomes Data Processing Report - $population$ samples}}}
|
|
\rhead{}
|
|
\chead{}
|
|
|
|
\begin{multicols}{2}
|
|
\begin{tabular}{|r|l|}
|
|
\multicolumn{2}{l}{\bfseries{Project Summary ($study_id$)}} \\
|
|
\hline
|
|
Used samples & $used_samples$ \\
|
|
Unused samples & $unused_samples$ \\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
\begin{tabular}{|r|l|}
|
|
\multicolumn{2}{l}{\bfseries{Sequencing Summary}} \\
|
|
\hline
|
|
Sequencers & $sequencers$ \\
|
|
Used lanes & $used_lanes$ \\
|
|
Unused lanes & $unused_lanes$ \\
|
|
Used lanes/sample & $used_lanes_per_sample$ \\
|
|
Lane parities & $lane_parities$ \\
|
|
Read lengths & $read_lengths$ \\
|
|
Sequencing dates & $sequencing_dates$ \\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
\begin{tabular}{|r|l|l|}
|
|
\multicolumn{3}{l}{\bfseries{Bases Summary (excluding unused lanes/samples)}} \\
|
|
\hline
|
|
& Per lane & Per sample \\
|
|
\hline
|
|
Reads & $reads_per_lane$ & $reads_per_sample$ \\
|
|
Used bases & $used_bases_per_lane$ & $used_bases_per_sample$ \\
|
|
Coverage & $coverage_per_lane$ & $coverage_per_sample$ \\
|
|
\% loci $>$ 1x covered & $loci_gt_1x_per_lane$ & $loci_gt_1x_per_sample$ \\
|
|
\% loci $>$ 2x covered & $loci_gt_2x_per_lane$ & $loci_gt_2x_per_sample$ \\
|
|
\% loci $>$ 3x covered & $loci_gt_3x_per_lane$ & $loci_gt_3x_per_sample$ \\
|
|
\% loci $>$ 4x covered & $loci_gt_4x_per_lane$ & $loci_gt_4x_per_sample$ \\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
\begin{tabular}{|r|l|l|}
|
|
\multicolumn{3}{l}{\bfseries{Variant Summary}} \\
|
|
\hline
|
|
& Found & Est. FP rate \\
|
|
\hline
|
|
All SNPs & $all_snps_found$ & $all_snps_fprate$ \\
|
|
Known SNPs & $known_snps_found$ & $known_snps_fprate$ \\
|
|
Novel SNPs & $novel_snps_found$ & $novel_snps_fprate$ \\
|
|
\hline
|
|
\end{tabular}
|
|
\end{multicols}
|
|
|
|
%\lfoot{kiran@broadinstitute.org}
|
|
%\cfoot{}
|
|
%\rfoot{}
|
|
\end{document}
|