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gatk-3.8/public/gatk-framework/src
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Eric Banks ffaf92f871 Added new functionality to the FastaAlternateReferenceMaker to have it output IUPAC codes for het sites. 
Enable it with the new --useIUPAC argument.
Added both unit and integration tests for the new functionality - and fixed up the
exising tests once I was in there.
 		2014-03-12 14:31:57 -04:00
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main Added new functionality to the FastaAlternateReferenceMaker to have it output IUPAC codes for het sites. 2014-03-12 14:31:57 -04:00
test Added new functionality to the FastaAlternateReferenceMaker to have it output IUPAC codes for het sites. 2014-03-12 14:31:57 -04:00