gatk3的最后一个经典版本3.8

David Roazen a0be74c2ef Ant target to package a GATK jar with private included ... Needed before we can start emitting full unstable jars from Bamboo for our internal use.		2013-03-01 15:33:59 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Split long-running integration test classes into multiple classes	2013-03-01 13:55:23 -05:00
public	Merge pull request #76 from broadinstitute/md_kb_bugfix_GSA-795	2013-03-01 10:52:16 -08:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Ant target to package a GATK jar with private included	2013-03-01 15:33:59 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00