ebanks 0a2304eff8 - Rename minConfidenceScore in VariantEval to minPhredConfidenceScore ... - Moved validation walkers to new qc dir - Killed unused test git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2218 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-02 17:59:19 +00:00
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varianteval	- Rename minConfidenceScore in VariantEval to minPhredConfidenceScore	2009-12-02 17:59:19 +00:00
variantstovcf	changes to VCF output, and updated MD5's in the integration tests	2009-10-14 18:42:48 +00:00
ClipReadsWalkersIntegrationTest.java	Softclipping support in clip reads walker. Minor improvement to WalkerTest -- now can specify file extensions for tmp files. Matt -- I couldn't easily create non-presorted SAM file. The softclipper has an impact on this.	2009-10-19 21:54:53 +00:00
ConcordanceTruthTableTest.java	adding an extra bit of data to come out of CTT (number of chips with actual data)	2009-11-19 17:46:10 +00:00
HapmapPoolAllelicInfoIntegrationTest.java	fixes for VariantAnnotations and second bases. Misc. removal of failing (and unstable) integration tests that require rereview	2009-12-02 15:41:35 +00:00