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gatk-3.8/protected/java
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Geraldine Van der Auwera 4d20c71e09 Improvements to various gatkdocs 
- Make -rod required
    - Document that contaminationFile is currently not functional with HC
    - Document liftover process more clearly
    - Document VariantEval combinations of ST and VE that are incompatible
    - Added a caveat about using MVLR from HC and UG.
    - Added caveat about not using -mte with -nt
    - Clarified masking options
    - Fixed docs based on Erics comments
 		2013-08-10 10:01:31 -07:00
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src/org/broadinstitute/sting Improvements to various gatkdocs 2013-08-10 10:01:31 -07:00
test/org/broadinstitute/sting Separate num Gaussians for + and - GMM in VQSR 2013-08-07 07:36:50 -04:00