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gatk-3.8/public/c++/VectorPairHMM
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Karthik Gururaj a03d83579b Matrices in baseline C++ (no vector) implementation of PairHMM are now 
allocated on heap using "new". Stack allocation led to program crashes
for large matrix sizes.
 		2014-02-07 23:22:05 -08:00
..
.gitignore 1. Enabled FTZ in LoadTimeInitializer.cc 2014-02-06 11:01:33 -08:00
JNI_README Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
LoadTimeInitializer.cc 1. Split main JNI function into initializeTestcases, compute_testcases 2014-02-06 14:35:32 -08:00
LoadTimeInitializer.h 1. Split main JNI function into initializeTestcases, compute_testcases 2014-02-06 14:35:32 -08:00
Makefile Merge branch 'test_branch' 2014-02-06 11:18:18 -08:00
Sandbox.cc 1. Enabled FTZ in LoadTimeInitializer.cc 2014-02-06 11:01:33 -08:00
Sandbox.h 1. Enabled FTZ in LoadTimeInitializer.cc 2014-02-06 11:01:33 -08:00
Sandbox.java 1. Enabled FTZ in LoadTimeInitializer.cc 2014-02-06 11:01:33 -08:00
Sandbox_JNIHaplotypeDataHolderClass.h 1. Enabled FTZ in LoadTimeInitializer.cc 2014-02-06 11:01:33 -08:00
Sandbox_JNIReadDataHolderClass.h 1. Enabled FTZ in LoadTimeInitializer.cc 2014-02-06 11:01:33 -08:00
avx_function_instantiations.cc Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
baseline.cc Matrices in baseline C++ (no vector) implementation of PairHMM are now 2014-02-07 23:22:05 -08:00
define-double.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
define-float.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
define-sse-double.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
define-sse-float.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
headers.h 1. Split main JNI function into initializeTestcases, compute_testcases 2014-02-06 14:35:32 -08:00
jni_common.h 1. Split main JNI function into initializeTestcases, compute_testcases 2014-02-06 14:35:32 -08:00
jnidebug.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.cc Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc 1. Split main JNI function into initializeTestcases, compute_testcases 2014-02-06 14:35:32 -08:00
org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
pairhmm-1-base.cc 1. Split main JNI function into initializeTestcases, compute_testcases 2014-02-06 14:35:32 -08:00
pairhmm-template-kernel.cc Adding comments to pairhmm-template-kernel 2014-02-06 20:13:06 -08:00
pairhmm-template-main.cc Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
run.sh Modified run.sh 2014-01-27 14:56:46 -08:00
shift_template.c Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
sse_function_instantiations.cc Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
template.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
utils.cc Check only for SSE 4.1 (rather than SSE 4.2) when trying to use the SSE 2014-02-07 15:19:55 -08:00
utils.h Check only for SSE 4.1 (rather than SSE 4.2) when trying to use the SSE 2014-02-07 15:19:55 -08:00
vector_defs.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00
vector_function_prototypes.h Moved vector JNI code to public/c++/VectorPairHMM 2014-01-27 14:52:59 -08:00