gatk3的最后一个经典版本3.8

Mark DePristo 9fd30d6f1c When writing the initial commit for nt + nct I realized this class was really just a ThreadGroupOutputTracker ... -- The code is cleaner and the logical more obvious now.		2012-09-24 14:15:36 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	RR bug: we were adding synthetic reads from the header only before the variant region, which meant that reads that overlap the variant region but that weren't used for the consensus (because e.g. of low base quality for the spanning base) were never being used at all. Instead, add synthetic reads from before and spanning the variant region.	2012-09-24 13:29:37 -04:00
public	When writing the initial commit for nt + nct I realized this class was really just a ThreadGroupOutputTracker	2012-09-24 14:15:36 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00