hanna 9f7cf73411 Output stream management fixes. I completely screwed up the output stream management system, but cleverly masked this fact by breaking some other stream management functionality that masked the problem. ... Sigh. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1630 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-15 21:06:45 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Output stream management fixes. I completely screwed up the output stream management system, but cleverly masked this fact by breaking some other stream management functionality that masked the problem.	2009-09-15 21:06:45 +00:00
test/org/broadinstitute/sting	incremental clean-up and changes for VariantEval, moved DiploidGenotype to a better home, and fixed a spelling error.	2009-09-15 04:48:42 +00:00