ebanks 9f3b99c11b Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. ... Removing obsolete genotyping classes. First stage of removing dependence on old Genotype class. More changes to come. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2960 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-09 03:41:07 +00:00
..
tracks	removing non-ascii characters from my Copyright and from VariantEval2Walker	2010-02-18 18:54:36 +00:00
utils	docs, cleanup, and some improvements to the iterators.	2010-02-26 22:36:04 +00:00
PlinkRodTest.java	Minor changes to oneoff walkers. PlinkRod altered but still commented.	2010-02-08 18:49:56 +00:00
ReadMetaDataTrackerTest.java	a little clean-up: move setting the bases of generated reads into Artificial SAM Utils now that the clean read injector test is gone.	2010-03-03 16:31:45 +00:00
ReferenceOrderedDataTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
RodGLFTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
RodVCFTest.java	Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system.	2010-03-09 03:41:07 +00:00
TabularRODTest.java	RODs for reads phase 2: modified RODRecordList to implement List<ReferenceOrderedDatum> so I could stub it out for testing, added a FlashBackIterator which is needed to prevent the ResourcePool from opening infinity+1 iterators, and some other interfaces to make unit testing much smoother.	2010-02-25 22:48:55 +00:00
rodDbSNPTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00