gatk-3.8/java/test/org/broadinstitute/sting/gatk/datasources/providers
aaron ca2cd9d4f5 a little clean-up: move setting the bases of generated reads into Artificial SAM Utils now that the clean read injector test is gone.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2919 348d0f76-0448-11de-a6fe-93d51630548a
2010-03-03 16:31:45 +00:00
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AllLocusViewTest.java Basic support for very simple index-driven locus traversals. Interface has been changed to 2010-01-29 03:14:26 +00:00
CoveredLocusViewTest.java Basic support for very simple index-driven locus traversals. Interface has been changed to 2010-01-29 03:14:26 +00:00
LocusReferenceViewTest.java Clean up the code a bit following the introduction of reduceByInterval. 2010-02-25 01:20:22 +00:00
LocusViewTemplate.java Reduce by interval alterations to interface with new sharding system. This checkin with be followed by a 2010-02-25 00:16:50 +00:00
ReadBasedReferenceOrderedViewTest.java a little clean-up: move setting the bases of generated reads into Artificial SAM Utils now that the clean read injector test is gone. 2010-03-03 16:31:45 +00:00
ReadReferenceViewTest.java Reduce by interval alterations to interface with new sharding system. This checkin with be followed by a 2010-02-25 00:16:50 +00:00
ReferenceOrderedViewTest.java Reduce by interval alterations to interface with new sharding system. This checkin with be followed by a 2010-02-25 00:16:50 +00:00
ReferenceViewTemplate.java Aaron: 1, GenomeLoc: 0. I changed our GenomeLoc class, seperating the creation of a genome loc (with the reference setup) to a parser class. GenomeLoc now just represents the actual genomic postion. The constructors are now package-protected (to enforce using the parser), but we may want to expose some constructors in the future. 2009-06-22 14:39:41 +00:00
ShardDataProviderTest.java Reduce by interval alterations to interface with new sharding system. This checkin with be followed by a 2010-02-25 00:16:50 +00:00