hanna a7fe07c404 A few stopgap fixes to get the GATK to the point where the old sharding ... infrastructure can be torn down: 1) New sharding system emulates old MonolithicSharding mechanism. 2) Better awareness of differences between fasta and BAM files when creating shards. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2948 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-07 21:01:25 +00:00
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providers	a little clean-up: move setting the bases of generated reads into Artificial SAM Utils now that the clean read injector test is gone.	2010-03-03 16:31:45 +00:00
shards	A few stopgap fixes to get the GATK to the point where the old sharding	2010-03-07 21:01:25 +00:00
simpleDataSources	A few stopgap fixes to get the GATK to the point where the old sharding	2010-03-07 21:01:25 +00:00