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gatk-3.8/java/test/org/broadinstitute/sting
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ebanks 9f3b99c11b Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 
Removing obsolete genotyping classes.
First stage of removing dependence on old Genotype class.
More changes to come.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2960 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-03-09 03:41:07 +00:00
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alignment oops - didn't mean to check this in 2010-03-02 20:28:22 +00:00
gatk Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 2010-03-09 03:41:07 +00:00
oneoffprojects/walkers Add integration test for quartiles overflowing on interval reduce 2010-03-08 16:18:45 +00:00
playground/gatk/walkers Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 2010-03-09 03:41:07 +00:00
utils Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 2010-03-09 03:41:07 +00:00
BaseTest.java added root GATKData variable 2010-02-12 15:25:34 +00:00
TrivialInstrumenter.java fixed a bunch of comments and license headers. 2009-06-10 14:10:46 +00:00
WalkerTest.java another test-with-multiple outputs fix 2010-03-04 22:46:15 +00:00