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ebanks 9f3b99c11b Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 
Removing obsolete genotyping classes.
First stage of removing dependence on old Genotype class.
More changes to come.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2960 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-03-09 03:41:07 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 2010-03-09 03:41:07 +00:00
test/org/broadinstitute/sting Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. 2010-03-09 03:41:07 +00:00