41 lines
1.9 KiB
XML
41 lines
1.9 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<package name="GenomeAnalysisTK">
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<version file="StingText.properties" property="org.broadinstitute.sting.gatk.version" />
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<executable name="GenomeAnalysisTK">
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<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
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<resource-bundle file="StingText.properties" />
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<dependencies>
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<!-- Core walkers -->
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<package name="org.broadinstitute.sting.gatk.walkers.**" />
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<!-- Filters -->
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<package name="org.broadinstitute.sting.gatk.filters" />
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<!-- Tribble codecs -->
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<package name="org.broad.tribble.*" />
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<!-- Workaround - depend on the logger impl required by JEXL -->
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<package name="org.apache.commons.logging.impl" />
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</dependencies>
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</executable>
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<modules>
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<module file="AnalyzeCovariates.xml"/>
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</modules>
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<resources>
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<!-- GATK sample code and build scripts -->
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<file name="java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java" />
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<file name="java/src/org/broadinstitute/sting/gatk/walkers/PileupWalker.java" />
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<file name="java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java" />
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<file name="java/src/org/broadinstitute/sting/gatk/walkers/qc/CountLociWalker.java" />
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<file name="java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReadsWalker.java" />
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<file name="java/src/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupWalker.java" />
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<!-- Sample reads and reference files -->
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<file name="testdata/exampleBAM.bam" />
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<file name="testdata/exampleBAM.bam.bai" />
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<file name="testdata/exampleFASTA.fasta" />
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<file name="testdata/exampleFASTA.fasta.fai" />
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<file name="testdata/exampleFASTA.dict" />
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</resources>
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<release>
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<executable directory="/humgen/gsa-hpprojects/GATK/bin" symlink="current" />
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<archive directory="/web/ftp/pub/gsa/GenomeAnalysisTK" symlink="GenomeAnalysisTK-latest.tar.bz2" />
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</release>
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</package>
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