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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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Mark DePristo 9f2851d769 Updating UnifiedGenotyperGeneralPloidyIntegrationTest following rebasing 
-- Created a JIRA ticket https://jira.broadinstitute.org/browse/GSA-623 for Guillermo to look at the differences as the multi-allelic nature of many sites seems to change with the new more protected infrastructure.  This may be due to implementation issues in the pooled caller, problems with my interface, or could be a genuine improvement.
 		2012-10-21 20:23:11 -04:00
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bqsr updating BQSR integration tests 2012-09-19 14:10:34 -04:00
compression/reducereads Refactored the BaseCounts classes so that they are safer and allow for calculations on the most probable base (which is not necessarily the most common base). 2012-10-04 10:37:11 -04:00
genotyper Updating UnifiedGenotyperGeneralPloidyIntegrationTest following rebasing 2012-10-21 20:23:11 -04:00
haplotypecaller Updating integration tests for minor changes due to switching to EXACT_INDEPENDENT model by default 2012-10-21 12:43:46 -04:00