Mark DePristo 9f260c0dc1 Zero byte index bug fix for RandomlySplitVariants + cleanup ... -- vcfWriter2 was never being closed in onTraversalDone(), so the on the fly index file was being created but never actually properly written to the file. -- This bug is ultimately due to the inability of the GATK to allow multiple VCF output writers as @Output arguments, though -- Removed the unnecessary local variable iFraction, = 1000 * the input fraction argument. Now the system just uses a double random number and compares to the input fraction at all. Is there some subtle reason I don't appreciate for this programming construct?		2011-11-04 09:45:20 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Zero byte index bug fix for RandomlySplitVariants + cleanup	2011-11-04 09:45:20 -04:00
test	GATKSAMRecord refactor	2011-11-03 15:43:26 -04:00