..
R
Split RScriptExecutorUnitTest into public and private test classes.
2011-10-14 20:04:42 -04:00
baq
Putative fix for BAQ array out of bounds
2011-09-21 11:25:08 -04:00
bed
Fixing broken paths to the testdata directory throughout the codebase.
2011-06-29 17:36:47 -04:00
clipreads
Fixing conflicts
2011-10-03 19:07:59 -07:00
codecs
Fixed long-standing bug in tribble index creation
2011-09-20 10:53:18 -04:00
collections
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
fasta
Reduced the number of combinations being tested here, which was overkill
2011-09-01 10:42:43 -04:00
genotype /vcf
Make DiploidGenotype enum private to walkers.genotyper
2011-09-24 08:48:33 -04:00
interval
Merged bug fix from Stable into Unstable
2011-10-04 21:00:34 -07:00
pileup
Cleanup FragmentPileup before main repo commit
2011-10-24 14:40:05 -04:00
report
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
sam
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
text
GATKReport v0.2:
2011-08-03 00:24:47 -04:00
threading
Removed GATK use of distributed parallelism framework.
2011-07-20 16:26:09 -04:00
variantcontext
Treat ./X genotypes as MIXED so that isHet, isHom, etc. still return the expected and correct values. Added docs to these accessors with contracts explicitly mentioned. Fixed case where NPE could be thrown.
2011-10-19 15:11:13 -04:00
BaseUtilsUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
GenomeLocParserUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
GenomeLocSortedSetUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
GenomeLocUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
MWUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
MathUtilsUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
PathUtilsUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
ReadUtilsUnitTest.java
Moving reduced read functionality into GATKSAMRecord
2011-10-21 13:28:05 -04:00
ReservoirDownsamplerUnitTest.java
Moving reduced read functionality into GATKSAMRecord
2011-10-21 13:28:05 -04:00
SimpleTimerUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
UtilsUnitTest.java
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
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