Mark DePristo 502592671d Cleanup FragmentPileup before main repo commit ... -- removed intermiate functions. Now only original version and best optimized new version remain -- Moved general artificial read backed pileup creation code into ArtificialSamUtils		2011-10-24 14:40:05 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Cleanup FragmentPileup before main repo commit	2011-10-24 14:40:05 -04:00