gatk3的最后一个经典版本3.8

Mauricio Carneiro 9ea40f2e41 Deletions/Insertions in hard clip and bug fixes ... * Deletions now count as hard clipped bases in order to recover the original alignment start of a clipped read. * Insertions do not count as hard clipped bases for the same reason. * This created a bug in the previous cigar cleaning function. Fixed.		2011-09-23 16:37:08 -04:00
public	Deletions/Insertions in hard clip and bug fixes	2011-09-23 16:37:08 -04:00
settings	Accidentally committed unclean tribble jar to repo	2011-09-21 10:16:17 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00
ivy.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00