Yossi Farjoun c79e8ca53e Added an info log containing the SAM/BAM files that were eventually found from the commandline (useful for when there are files hiding inside bam.lists which may or may not have been constructed correctly...) ... Added a @hidden option controling the appearance of the full BamList in the log		2014-01-17 11:25:21 -05:00
..
R	Something changed with the ggtitle syntax in the latest version of ggplot2.	2013-08-14 14:40:03 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
java	Added an info log containing the SAM/BAM files that were eventually found from the commandline (useful for when there are files hiding inside bam.lists which may or may not have been constructed correctly...)	2014-01-17 11:25:21 -05:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
scala	Merge remote-tracking branch 'origin/master' into mf_new_RBP	2013-12-19 10:42:20 -05:00
testdata	Fixed up and refactored what seems to be a useful private tool to create simulated reads around a VCF.	2014-01-15 13:49:31 -05:00