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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
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Mauricio Carneiro 4ac50c89ad Updating TestNG to the latest version 
-- changed SkipException constructors that are now private in TestNG
-- Updated build.xml to use the latest testng
-- Added guice dependency to ivy
-- Fixed broken SampleDBUnitTest

The SampleDBUnitTest was only passing before because the map comparison in the old TestNG was broken. It was comparing two DIFFERENT samples and testing for "equals"

GSA-695 #resolve
 		2013-02-22 09:40:23 -05:00
..
datasources Re-enabled fastBAMindexing by replacing the FileChannel with a SeekableBufferedStream 2013-02-14 17:51:15 -05:00
downsampling Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
executive Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
iterators Refactor LIBS into utils.locusiterator before refactoring 2013-01-11 15:17:16 -05:00
refdata Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
report Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
samples Updating TestNG to the latest version 2013-02-22 09:40:23 -05:00
traversals Collapse the downsampling fork in the GATK engine 2013-01-28 01:50:30 -05:00
walkers Merge pull request #31 from broadinstitute/yf_fast_BAM_index_traversal 2013-02-15 09:12:32 -08:00
CommandLineGATKUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
EngineFeaturesIntegrationTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GenomeAnalysisEngineUnitTest.java ActivityProfile and ActiveRegions respects engine interval boundaries 2013-02-18 10:40:25 -05:00
MaxRuntimeIntegrationTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
WalkerManagerUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00