hanna a7fe07c404 A few stopgap fixes to get the GATK to the point where the old sharding ... infrastructure can be torn down: 1) New sharding system emulates old MonolithicSharding mechanism. 2) Better awareness of differences between fasta and BAM files when creating shards. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2948 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-07 21:01:25 +00:00
..
ArtificialResourcePool.java	Reduce by interval alterations to interface with new sharding system. This checkin with be followed by a	2010-02-25 00:16:50 +00:00
ReferenceOrderedDataPoolTest.java	RODs for reads phase 2: modified RODRecordList to implement List<ReferenceOrderedDatum> so I could stub it out for testing, added a FlashBackIterator which is needed to prevent the ResourcePool from opening infinity+1 iterators, and some other interfaces to make unit testing much smoother.	2010-02-25 22:48:55 +00:00
SAMBAMDataSourceTest.java	A few stopgap fixes to get the GATK to the point where the old sharding	2010-03-07 21:01:25 +00:00
SAMByIntervalTest.java	A few stopgap fixes to get the GATK to the point where the old sharding	2010-03-07 21:01:25 +00:00
SAMByReadsTest.java	A few stopgap fixes to get the GATK to the point where the old sharding	2010-03-07 21:01:25 +00:00