gatk-3.8/java
hanna 9db02059ac Fix for Ryan's issue: reads ending with indel distort the location of the
pileup, resulting a two map() calls for the same locus (and no map call for
the locus immediately following).
Fixed bug and added comprehensive unit tests.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5067 348d0f76-0448-11de-a6fe-93d51630548a
2011-01-24 19:49:39 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Fix for Ryan's issue: reads ending with indel distort the location of the 2011-01-24 19:49:39 +00:00
test Fix for Ryan's issue: reads ending with indel distort the location of the 2011-01-24 19:49:39 +00:00