Eric Banks 9da7bbf689 Refactoring the PerReadAlleleLikelihoodMap in preparation for adding contntamination downsampling into protected only.		2012-10-24 15:49:07 -04:00
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src/org/broadinstitute/sting	Refactoring the PerReadAlleleLikelihoodMap in preparation for adding contntamination downsampling into protected only.	2012-10-24 15:49:07 -04:00
test/org/broadinstitute/sting	MaxAltAlleles now defaults to 6, no more MaxAltAllelesForIndels	2012-10-22 13:47:56 -04:00