David Roazen 9d9d438bc4 New VariantAnnotatorEngine capability: an initialize() method for all annotation classes. ... All VariantAnnotator annotation classes may now have an (optional) initialize() method that gets called by the VariantAnnotatorEngine ONCE before annotation starts. As an example of how this can be used, the SnpEff annotation class will use the initialize() method to check whether the SnpEff version number stored in the vcf header is a supported version, and also to verify that its required RodBinding is present.		2011-09-12 13:00:53 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	New VariantAnnotatorEngine capability: an initialize() method for all annotation classes.	2011-09-12 13:00:53 -04:00
test	Changing the VQSR command line syntax back to the parsed tags approach. This cleans up the code and makes sure we won't be parsing the same rod file multiple times. I've tried to update the appropriate qscripts.	2011-09-12 12:17:43 -04:00