gatk3的最后一个经典版本3.8

Guillermo del Angel 9d7aa3cda8 a) Initial raw version of CMI BAM->VCF pipeline (most likely not working yet, but at least compiles and produces reasonable command lines), b) rename FASTQ->BAM script so name is more descriptive		2012-10-09 11:45:24 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Fixed ReduceReads bug where variant regions were missing.	2012-09-19 16:09:08 -04:00
public	initial cancer pipeline with mutations and partial indel support	2012-10-04 11:37:11 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00