Mark DePristo a90482c772 Rev. tribble to v101 with another putative open file leak fix ... Scalability bugfixes; can issues tens of thousands of queries to an reader without opening too many files -- Fixed missing close() statement in TribbleIndexedFeatureReader -- Fixed NPE in TabixIteratorLineReader -- Added scalability test that confirms .query() failure and subsequent fix Note this actually fixes a tested and reproducible scability issue. Might not be the only one but I believe it should do the trick. Sorry everyone for the inconvenience. Note that we now have a test in Tribble to ensure this doesn't happen again.		2012-05-04 15:40:41 -04:00
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com.google.code.caliper	Killed sonatype repository; it's failed me too many times at this point.	2011-06-09 16:07:02 +00:00
com.google.code.cofoja	Fixing Contracts for Java, and enabling contracts by default for unit/integration tests.	2011-07-08 15:34:39 -04:00
edu.mit.broad	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
gov.nist	Adding Jama for Ryan.	2010-04-27 14:30:36 +00:00
net.sf	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
net.sf.gridscheduler	Switched GridEngine from looking from environment variable to using embedded jar.	2011-07-05 21:59:00 -04:00
net.sf.snpeff	SnpEff 2.0.5 support. Re-enabled SnpEff in the HybridSelectionPipeline.	2012-01-03 15:18:36 -05:00
org.broad	Rev. tribble to v101 with another putative open file leak fix	2012-05-04 15:40:41 -04:00