gatk-3.8/public/scala/src/org/broadinstitute/sting/queue
Khalid Shakir 2ef456d51a Added explicit @ClassType annotations to @Argument for Option[Int] or Option[Double] since scala seems to change the reflected type to Option[Object] on some systems.
Changed ReflectionUtils.getGenericTypes' order of looking for @ClassType since the primitive generic wasn't completely erased, only changed to Object which is incorrect.
More fixes to @Arguments labeled as java.io.File via incorrect @Input annotation.
Put in a default undocumented implementation of @Argument doc() to match the one added to @Input.
2012-10-19 13:20:29 -04:00
..
engine Moved the class field caching from QScript to a ClassFieldCache utility. 2012-10-16 18:49:31 -04:00
extensions Moved the class field caching from QScript to a ClassFieldCache utility. 2012-10-16 18:49:31 -04:00
function Moved the class field caching from QScript to a ClassFieldCache utility. 2012-10-16 18:49:31 -04:00
library Fix edge case for very small VCFs 2012-01-19 00:51:28 -05:00
util Added explicit @ClassType annotations to @Argument for Option[Int] or Option[Double] since scala seems to change the reflected type to Option[Object] on some systems. 2012-10-19 13:20:29 -04:00
QCommandLine.scala Moved the class field caching from QScript to a ClassFieldCache utility. 2012-10-16 18:49:31 -04:00
QException.scala Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
QScript.scala Added more logging to push/pull of RemoteFiles. 2012-10-17 09:52:17 -04:00
QScriptManager.scala Fixed package error and a few deprecated scala warnings. 2012-10-15 15:29:40 -04:00
QSettings.scala Added explicit @ClassType annotations to @Argument for Option[Int] or Option[Double] since scala seems to change the reflected type to Option[Object] on some systems. 2012-10-19 13:20:29 -04:00