aaron 8fbc0c8473 fix for bug GSA-234: fasta index files couldn't handle anything but letters, numbers, or spaces in the contig name ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2147 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-24 19:19:47 +00:00
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ArtificialFastaUtils.java	made a fake fasta generator, so we can now generate a complete bam / fasta combo of made up data.	2009-07-01 21:35:34 +00:00
FastaSequenceIndex.java	fix for bug GSA-234: fasta index files couldn't handle anything but letters, numbers, or spaces in the contig name	2009-11-24 19:19:47 +00:00
IndexedFastaSequenceFile.java	Bumping version of Picard for firehose compatibility.	2009-10-16 19:38:56 +00:00
package.html	Package level documentation -- helps new users get acclimated to the codebase more quickly.	2009-06-17 16:27:48 +00:00