gatk-3.8/scala
carneiro 9c2c5efe35 a modified version of the Methods Development calling pipeline made to work with pacbio data.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5225 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-10 16:06:50 +00:00
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qscript a modified version of the Methods Development calling pipeline made to work with pacbio data. 2011-02-10 16:06:50 +00:00
src/org/broadinstitute/sting Thanks to Matt for walking me through a proper version of VCF_BAM_utilities! Feel free to add to it, or use it to get the samples in a VCF file, a BAM file, or a collection of BAM files 2011-02-09 18:08:27 +00:00
test/org/broadinstitute/sting/queue Renamed the pipeline yaml dbsnpFile to genotypeDbsnp, and added an evalDbsnp. 2011-02-07 22:01:09 +00:00