Eric Banks 9c1728416c Revert "Updating md5 for fixed file" because this was fixed properly in unstable (but will break SnpEff if put into Stable). ... This reverts commit 6b4182c6ab3e214da4c73bc6f3687ac6d1c0b72c.		2011-09-22 13:16:42 -04:00
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alignment	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
commandline	Bugfix for file that must not exist on disk	2011-08-29 17:00:10 -04:00
gatk	Revert "Updating md5 for fixed file" because this was fixed properly in unstable (but will break SnpEff if put into Stable).	2011-09-22 13:16:42 -04:00
jna	Avoid segfaults due to out of date and possibly abandonded LSF DRMAA implementation when use'ing LSF instead of .combined_LSF_SGE	2011-08-23 23:49:36 -04:00
pipeline	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
utils	start of VariantContextUtils UnitTest	2011-09-22 12:10:39 -04:00
BaseTest.java	Fixing syntax of BQSR and UG performance tests.	2011-08-11 17:04:09 -04:00
MD5DB.java	Go for global integrationtest path first, if possible.	2011-07-26 17:35:30 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Fixed long-standing bug in tribble index creation	2011-09-20 10:53:18 -04:00