aaron 9c0dba6979 Some quick documentation and typo changes ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1076 348d0f76-0448-11de-a6fe-93d51630548a		2009-06-23 13:40:13 +00:00
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gatk	Changed the duplicate traversal over to the new style of traversal and plumbed into the genome analysis engine. Also added a CountDuplicates walker, to validate the engine.	2009-06-22 21:11:18 +00:00
playground	Some quick documentation and typo changes	2009-06-23 13:40:13 +00:00
secondarybase	Wrote a public static version of loadFirstNReasonableReadsTrainingSet() so Alec can call it.	2009-06-18 20:18:17 +00:00
utils	made the constructors protected. Protected also mean package-protected, so other methods in the utils class can call these constructors (mainly the parser), as well as any inheriting classes. Also fixed some Intellij suggested clean-ups and documentation	2009-06-22 16:01:59 +00:00