gatk-3.8/scala/src/org/broadinstitute/sting/queue
kshakir 0cc48d46ec Escaping quotes in dot files.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4344 348d0f76-0448-11de-a6fe-93d51630548a
2010-09-24 17:13:12 +00:00
..
engine Escaping quotes in dot files. 2010-09-24 17:13:12 +00:00
extensions At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
function Queue now does job tracking (replace -run with -status in the command line). Produces output that looks like: 2010-09-24 00:59:09 +00:00
util Fix for Matt: For Mac OS 10.6 temporary directories replace paths like '/var/folders/Ax/AxRUoz51Fh05fVe-j6C1Wk+++TI/-Tmp-/' with '/tmp/' so that google reflections 0.95RC2 still works on classes in the directory. 2010-09-20 22:02:07 +00:00
QCommandLine.scala Queue now does job tracking (replace -run with -status in the command line). Produces output that looks like: 2010-09-24 00:59:09 +00:00
QException.scala Fix for Queue 2010-09-12 15:18:08 +00:00
QScript.scala Changed logging level to default at INFO instead of WARN. 2010-08-09 16:42:48 +00:00
QScriptManager.scala At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
QSettings.scala Created a new playground script for cleaning bams in Firehose. 2010-08-13 23:52:24 +00:00