gatk3的最后一个经典版本3.8

Mark DePristo 9bf1d138d9 New GATK argument interface for data and cpu threads ... -- Closes GSA-515 Nanoscheduler GSA-542 Good interface to nanoScheduler -- Old -nt means dataThreads -- New -cnt (--num_cpu_threads_per_data_thread) gives you n cpu threads for each data thread in the system -- Cleanup logic for handling data and cpu threading in HMS, LMS, and MS -- GATKRunReport reports the total number of threads in use by the GATK, not just the nt value -- Removed the io,cpu tags for nt. Stupid system if you ask me. Cleaned up the GenomeAnalysisEngine and ThreadAllocation handling to be totally straightforward now		2012-09-05 15:45:24 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Revert "fixed a typo in StringText.properties"	2012-09-05 15:21:00 -04:00
public	New GATK argument interface for data and cpu threads	2012-09-05 15:45:24 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	More memory for gatkdocs and extracthelp targets	2012-09-05 15:45:22 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00