ebanks 9b9744109c Mark's new unified calculation model is now officially implemented. ... Because it doesn't actually use EM, it's no longer a subclass of the EM model. Note that you can't use it just yet because it doesn't actually emit calls (just prints to logger). I need to deal with general UG output tomorrow. Hold off until then, Mark, and then you can go wild. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1891 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-21 02:39:23 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Mark's new unified calculation model is now officially implemented.	2009-10-21 02:39:23 +00:00
test/org/broadinstitute/sting	Enabling correct high-performance ROD walker and moved VariantEval over to it. Performance improvements in variantEval in general. See wiki for full description	2009-10-20 23:31:13 +00:00