gatk3的最后一个经典版本3.8

David Roazen 9b84fa20bf Fix an issue with the classpath for external builds in build.xml ... Use "path" instead of "pathconvert" to construct the external.gatk.classpath. This allows the path to evolve as the build progresses, instead of being fixed early on to a value that (in some cases) could be incorrect.		2012-08-15 16:08:21 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Expanded the BQSR reporting script	2012-08-12 13:45:14 -04:00
public	In AlleleCount stratification, check to make sure the AC (or MLEAC) is valid (i.e. not higher than number of chromosomes) and throw a User Error if it isn't. Added a test for bad AC.	2012-08-14 15:02:30 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Fix an issue with the classpath for external builds in build.xml	2012-08-15 16:08:21 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00