gatk3的最后一个经典版本3.8

Mark DePristo 9b6ee0576f Fix bugs in the consensus genotype creation algorithm for the NA12878 KB ... -- Was screwing up mixed reviewed / non-reviewed sites. Now only considered reviewed calls, if any are present, or all calls if no reviewed sites are found -- Was just taking the first genotype, now it properly looks at all of the genotype calls and makes a reasonable guess what the answer should be -- Added unit tests for the consensus creation algorithm		2012-12-08 13:18:07 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Fixes GSA-671 / AFCalcResult.log10pNonRefByAllele should really be log10pRefByAllele	2012-12-07 16:03:40 -05:00
public	Fixes GSA-671 / AFCalcResult.log10pNonRefByAllele should really be log10pRefByAllele	2012-12-07 16:03:40 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00