Mark DePristo 9b5c79b49d Renamed InferredGeneticContext to CommonInfo ... -- I have no idea why I named this InferredGeneticContext, a totally meaningless term -- Renamed to CommonInfo. -- Made package protected, as no one should use this outside of VariantContext and Genotype -- UGEngine was using IGC constant, but it's now using the public one in VariantContext.		2011-11-14 14:28:52 -05:00
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AlleleUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenotypeLikelihoodsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenotypeUnitTest.java	Framework for genotype unit test	2011-09-24 08:56:45 -04:00
VCFJarClassLoadingUnitTest.java	Modified the VCFJarClassLoadingUnitTest to play nice with the packaged-jar test targets.	2011-10-25 14:47:15 -04:00
VariantContextBenchmark.java	More general handling of parameters for VariantContextBenchmark	2011-11-11 10:22:19 -05:00
VariantContextIntegrationTest.java	More tools moved over. Fixed the VariantContextIntegrationTest which was not useful because the md5s were all removed. In the future, instead of removing md5s (putting it in 'parameterization' mode), you should instead use @Test{enabled=false} since it's easier to track.	2011-08-10 14:24:40 -04:00
VariantContextUnitTest.java	Renamed InferredGeneticContext to CommonInfo	2011-11-14 14:28:52 -05:00
VariantContextUtilsUnitTest.java	Deleted MutableVariantContext	2011-11-14 14:19:06 -05:00
VariantJEXLContextUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00