gatk3的最后一个经典版本3.8

Mark DePristo 9b2be795a7 Initial working version of new ActiveRegionTraversal based on the LocusIteratorByState read stream ... -- Implemented as a subclass of TraverseActiveRegions -- Passes all unit tests -- Will be very slow -- needs logical fixes		2013-01-11 15:17:17 -05:00
licensing	Cleaning CRLF terminations in the licenses	2013-01-10 17:06:29 -05:00
protected/java	Near final cleanup of PileupElement	2013-01-11 15:17:17 -05:00
public	Initial working version of new ActiveRegionTraversal based on the LocusIteratorByState read stream	2013-01-11 15:17:17 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating to latest google caliper code	2013-01-11 15:17:16 -05:00