Mark DePristo 9b0ab4e941 Cleanup IndependentAllelesDiploidExactAFCalc ... -- Remove capability to truncate genotype likelihoods -- this wasn't used and isn't really useful after all -- Added lots of contracts and docs, still more to come. -- Created a default makeMaxLikelihoods function in ReferenceDiploidExactAFCalc and DiploidExactAFCalc so that multiple subclasses don't just do the default thing -- Generalized reference bi-allelic model in IndependentAllelesDiploidExactAFCalc so that in principle any bi-allelic reference model can be used.		2012-10-16 08:11:06 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Cleanup IndependentAllelesDiploidExactAFCalc	2012-10-16 08:11:06 -04:00
test	Updating missed integration test.	2012-10-15 22:31:52 -04:00